Blar i NTNU Open på forfatter "Pettersen, Jakob Peder"
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A study of the interactions and dynamics of microbial communties
Pettersen, Jakob Peder (Master thesis, 2019)De seneste årene har strukturen, sammensetningen og interaksjonene i mikrobielle samfunn vært et hett tema i de vitenskapelig miljøene. En rekke næringer som havbruk, vannbehandling og helse har mye å tjene dersom en utvidet ... -
csdR, an R package for differential co-expression analysis
Pettersen, Jakob Peder; Almaas, Eivind (Peer reviewed; Journal article, 2022)Background Differential co-expression network analysis has become an important tool to gain understanding of biological phenotypes and diseases. The CSD algorithm is a method to generate differential co-expression networks ... -
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts
Pettersen, Jakob Peder; Castillo, Sandra; Jouhten, Paula; Almaas, Eivind (Peer reviewed; Journal article, 2023)Background - Use of alternative non-Saccharomyces yeasts in wine and beer brewing has gained more attention the recent years. This is both due to the desire to obtain a wider variety of flavours in the product and to reduce ... -
Integrating large-scale data for biological network construction and analysis
Pettersen, Jakob Peder (Doctoral theses at NTNU;2023:205, Doctoral thesis, 2023)Recent advances in technology has enabled scientists to extract large amounts of data from biological experiments. Due to the scale of the data, computational analyses are required in order to arrive at meaningful ... -
Parameter inference for enzyme and temperature constrained genome-scale models
Pettersen, Jakob Peder; Almaas, Eivind (Journal article; Peer reviewed, 2023)The metabolism of all living organisms is dependent on temperature, and therefore, having a good method to predict temperature effects at a system level is of importance. A recently developed Bayesian computational framework ... -
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind (Peer reviewed; Journal article, 2021)Selection for bacteria which are K-strategists instead of r-strategists has been shown to improve fish health and survival in aquaculture. We considered an experiment where microcosms were inoculated with natural seawater ...